PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117776001
Common NameGSBRNA2T00095586001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 120aa    MW: 14099.4 Da    PI: 10.3411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117776001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05628123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C  C+k F r  nL+ H r H
  GSBRNA2T00117776001  6 FICDVCKKGFQREQNLQLHRRGH 28
                         89*******************88 PP

2zf-C2H215.35.9e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  GSBRNA2T00117776001  82 WKCDKCSKRYAVQSDWKAHSKTC 104
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-5528IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8528No hitNo description
PROSITE profilePS5015710.616628IPR007087Zinc finger, C2H2
SMARTSM003550.014628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-670103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-877102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MATNRFICDV CKKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTIFSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117776001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2229241e-167HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687367.18e-90PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013714612.18e-90PREDICTED: protein indeterminate-domain 4, chloroplastic
RefseqXP_013714613.18e-90PREDICTED: protein indeterminate-domain 4, chloroplastic
SwissprotQ8GYC11e-90IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A078FSD51e-89A0A078FSD5_BRANA; BnaC09g20970D protein
TrEMBLA0A0D3E7J13e-89A0A0D3E7J1_BRAOL; Uncharacterized protein
TrEMBLE5F7114e-89E5F711_9BRAS; Putative uncharacterized protein
STRINGAT2G02080.13e-88(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.16e-92indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]